Whole Exome sequencing for the 1000 Genomes Project - SRA

SRX103830: Whole Exome sequencing for the 1000 Genomes Project
8 ILLUMINA (Illumina HiSeq 2000) runs: 22.3M spots, 3.6G bases, 2.4Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

Sample: Coriell HG01862

Library:

Name: Catch-88592

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward barcode

Group tag	Basecalls
tagged_52	AAGGATGT

85 reverse

BI GSSR sample ID: 120495.0 
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MRT 
BI project name: C469 
BI work request ID: 26159 

Name	Step	Program	Version
base caller	2011-09-12 08:37:04.0	GAPipeline	RTA1.12.4.2

Runs: 8 runs, 22.3M spots, 3.6G bases, 2.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR359383	2,768,957	443M	300.2Mb	2011-10-29
SRR359384	2,856,729	457.1M	310.3Mb	2011-10-29
SRR359387	2,468,594	395M	268.3Mb	2011-10-29
SRR359388	2,897,782	463.6M	314.7Mb	2011-10-29
SRR359390	2,803,610	448.6M	302.9Mb	2011-10-29
SRR359395	2,857,447	457.2M	312.5Mb	2011-10-29
SRR359398	2,842,451	454.8M	309.1Mb	2011-10-29
SRR359400	2,816,480	450.6M	306.9Mb	2011-10-29

Supplemental Content

Gdi1 protein, partial [Tricholoma sp. 26 XXD-2021]
Gdi1 protein, partial [Tricholoma sp. 26 XXD-2021]
gi|2288963963|gb|UVH37839.1|

Protein
Rattus norvegicus niban apoptosis regulator 1 (Niban1), mRNA
Rattus norvegicus niban apoptosis regulator 1 (Niban1), mRNA
gi|15011896|ref|NM_022242.2|

Nucleotide
Homo sapiens cell-line MDA-MB-453 androgen receptor mRNA, complete cds
Homo sapiens cell-line MDA-MB-453 androgen receptor mRNA, complete cds
gi|5639998|gb|AF162704.1|

Nucleotide
Biopsy, Large-Core Needle
Biopsy, Large-Core Needle
The use of needles usually larger than 14-gauge to remove tissue samples large enough to retain cellular architecture for pathology examination.<br/>Year introduced: 2013

MeSH

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SRA